PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 651aa    MW: 74769.6 Da    PI: 8.0099
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.41.2e-1132736491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+ lL++cAeav+ ++ e a++lL+++++++s  g++ qRla+ f++AL arl+++++e+y+al++++ s   ++++l+a++lf  ++P++k s+
  XP_015873959.1 273 LRALLTNCAEAVAVNKRESAHQLLTQIRQHSSCFGNSSQRLAHSFANALDARLSGTGNEVYRALNAKNFS---VVDKLKATRLFLSACPLIKTSN 364
                     5789*****************************************************************9...********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ Nq +le +e+++++H+iDf+i++G+QWp+L+q L+ Rp+gpp lRiTg+++p +g   + +le tg rLak++++++vpf +n  +a r+e+
  XP_015873959.1 365 FLVNQKVLELAEKANTIHVIDFGIGHGFQWPSLIQRLSRRPRGPPLLRITGIDHPLPGlrPEARLEVTGTRLAKYCKRFNVPFVYNC-IAARWET 458
                     ********************************************************9999***************************.79***** PP

            GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279
                     +++e+L++++   E+++Vn+ ++  +llde+vs +++rd vLkl+++++P+++v+   +a+++++ F+ rf eal+++sa+fd+lea+ ++++  
  XP_015873959.1 459 ISYENLNINHrdVEVTIVNCLFRFRHLLDETVSWDNPRDCVLKLIRRINPHIFVHGVVNASYDAPFFMSRFKEALHHFSAVFDMLEATSGSQEgd 553
                     *******999889************************************************************************9998887777 PP

            GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++ri++E+e+ g++i nv+aceg+er+er e +++W+ r +++G++++pl+ +++k++k  ++  + + + v+e+ +++++gWk+r L+++S+W
  XP_015873959.1 554 eKDRIMLEQEVYGKHILNVIACEGFERIERPEMYKQWQFRHQRVGLRQIPLNREVMKKVKEQVKSSYHKDFVVDEDGEWMLQGWKGRILYALSCW 648
                     89*****************************************************************888************************* PP

            GRAS 374 r 374
                     +
  XP_015873959.1 649 K 649
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.307247629IPR005202Transcription factor GRAS
PfamPF035144.2E-111273649IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MNIEKTNNRR EEEIILNSIS QILLEEDLED VTTTDKFPNA TLEAAEKSFY DVLSQKFCSS  60
STSIIPPLII NSFNSQSDDH QYYTTIYSND AIVSNLHHIS SYNNNIPALP NFYSTGSQST  120
SCSLSTNNGD SINRRPLNMY HPFSKTPLTG FIEKNDNLIP LDFNETLSTV SSHHLYGKMR  180
KRKNHHHPPT ESHETERERN NNYKHRALYP EDQSDECIDL LDKVLFSNGE DTYSSVETST  240
NHHQISCRQT KGCIIGGSLR RKKKTNIEDL VDLRALLTNC AEAVAVNKRE SAHQLLTQIR  300
QHSSCFGNSS QRLAHSFANA LDARLSGTGN EVYRALNAKN FSVVDKLKAT RLFLSACPLI  360
KTSNFLVNQK VLELAEKANT IHVIDFGIGH GFQWPSLIQR LSRRPRGPPL LRITGIDHPL  420
PGLRPEARLE VTGTRLAKYC KRFNVPFVYN CIAARWETIS YENLNINHRD VEVTIVNCLF  480
RFRHLLDETV SWDNPRDCVL KLIRRINPHI FVHGVVNASY DAPFFMSRFK EALHHFSAVF  540
DMLEATSGSQ EGDEKDRIML EQEVYGKHIL NVIACEGFER IERPEMYKQW QFRHQRVGLR  600
QIPLNREVMK KVKEQVKSSY HKDFVVDEDG EWMLQGWKGR ILYALSCWKP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-402776498375GRAS family transcription factor containing p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873959.10.0PREDICTED: scarecrow-like protein 14
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-142SCARECROW-like 14